Variant report

Variant	rs4425370
Chromosome Location	chr4:19511439-19511440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10009149	0.87[ASN][1000 genomes]
rs10017144	0.92[EUR][1000 genomes]
rs10017883	0.87[ASN][1000 genomes]
rs10027111	1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031839	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942433	0.89[ASN][1000 genomes]
rs17508080	0.81[AFR][1000 genomes]
rs17570085	1.00[ASN][1000 genomes]
rs17570168	1.00[ASN][1000 genomes]
rs2200748	1.00[ASN][1000 genomes]
rs28674625	1.00[ASN][1000 genomes]
rs2874685	0.83[AMR][1000 genomes]
rs4593130	1.00[ASN][1000 genomes]
rs55880619	0.83[AMR][1000 genomes]
rs55964721	0.83[AMR][1000 genomes]
rs62296870	0.89[ASN][1000 genomes]
rs62296887	1.00[ASN][1000 genomes]
rs6826516	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6846330	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6846645	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6848523	1.00[ASN][1000 genomes]
rs6853029	0.89[ASN][1000 genomes]
rs6857775	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73092968	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73249357	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73249365	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73249369	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73249379	1.00[ASN][1000 genomes]
rs73249381	1.00[ASN][1000 genomes]
rs7666136	1.00[ASN][1000 genomes]
rs7681473	0.89[ASN][1000 genomes]
rs7682588	1.00[ASN][1000 genomes]
rs7686699	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691992	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291401	0.87[ASN][1000 genomes]
rs9997444	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19509600-19511800	Enhancers	HUVEC	blood vessel

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