Variant report

Variant	rs73249379
Chromosome Location	chr4:19594159-19594160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10025939	0.83[EUR][1000 genomes]
rs10027111	1.00[ASN][1000 genomes]
rs10031839	1.00[ASN][1000 genomes]
rs10516335	0.81[AFR][1000 genomes]
rs11721864	0.83[AFR][1000 genomes]
rs11939339	0.81[AFR][1000 genomes]
rs11942433	0.89[ASN][1000 genomes]
rs17508080	0.81[AFR][1000 genomes]
rs17511289	0.81[AFR][1000 genomes]
rs17511324	0.81[AFR][1000 genomes]
rs17511721	0.81[AFR][1000 genomes]
rs17570085	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17570168	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2200748	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28674625	1.00[ASN][1000 genomes]
rs4425370	1.00[ASN][1000 genomes]
rs4593130	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56182249	0.81[AFR][1000 genomes]
rs62295090	0.81[AFR][1000 genomes]
rs62295099	0.83[AFR][1000 genomes]
rs62295100	0.83[AFR][1000 genomes]
rs62295107	0.83[AFR][1000 genomes]
rs62295108	0.83[AFR][1000 genomes]
rs62296870	0.89[ASN][1000 genomes]
rs62296887	1.00[ASN][1000 genomes]
rs6846330	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6846645	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6848523	1.00[ASN][1000 genomes]
rs6853029	0.89[ASN][1000 genomes]
rs73092968	0.87[ASN][1000 genomes]
rs73236204	0.83[AFR][1000 genomes]
rs73249357	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73249365	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73249369	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73249381	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666136	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7675070	0.83[EUR][1000 genomes]
rs7681473	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7682042	0.83[EUR][1000 genomes]
rs7682477	0.83[EUR][1000 genomes]
rs7682588	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686699	1.00[ASN][1000 genomes]
rs7691992	1.00[ASN][1000 genomes]
rs901927	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1001485	chr4:19585423-19655316	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19594000-19594600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:19594000-19594800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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