Variant report

Variant	rs6846330
Chromosome Location	chr4:19557857-19557858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10009149	0.87[ASN][1000 genomes]
rs10017883	0.87[ASN][1000 genomes]
rs10027111	1.00[ASN][1000 genomes]
rs10031839	1.00[ASN][1000 genomes]
rs10516335	0.81[AFR][1000 genomes]
rs11939339	0.81[AFR][1000 genomes]
rs11942433	0.89[ASN][1000 genomes]
rs17508080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17511289	0.81[AFR][1000 genomes]
rs17511324	0.81[AFR][1000 genomes]
rs17511721	0.81[AFR][1000 genomes]
rs17570085	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17570168	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2200748	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28674625	1.00[ASN][1000 genomes]
rs4425370	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4593130	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56182249	0.81[AFR][1000 genomes]
rs62295090	0.81[AFR][1000 genomes]
rs62296870	0.89[ASN][1000 genomes]
rs62296887	1.00[ASN][1000 genomes]
rs6826516	0.87[ASN][1000 genomes]
rs6846645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848523	1.00[ASN][1000 genomes]
rs6853029	0.89[ASN][1000 genomes]
rs6857775	0.87[ASN][1000 genomes]
rs73092968	0.87[ASN][1000 genomes]
rs73249357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73249365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73249369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73249379	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73249381	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7666136	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7681473	0.89[ASN][1000 genomes]
rs7682588	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7686699	1.00[ASN][1000 genomes]
rs7691992	1.00[ASN][1000 genomes]
rs901927	0.81[AFR][1000 genomes]
rs9291401	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19557200-19558000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:19557600-19558000	Active TSS	Hela-S3	cervix

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