Variant report

Variant	rs10027111
Chromosome Location	chr4:19456724-19456725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr4:19456643-19457294	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000248515	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10001562	0.86[AFR][1000 genomes]
rs10009149	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10017144	0.99[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10017883	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10024291	0.92[AFR][1000 genomes]
rs10026163	0.89[AFR][1000 genomes]
rs10031839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17566280	0.90[EUR][1000 genomes]
rs2200748	1.00[ASN][1000 genomes]
rs28439386	0.90[EUR][1000 genomes]
rs28674625	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2874685	0.90[EUR][1000 genomes]
rs28889123	0.90[EUR][1000 genomes]
rs4371613	0.92[AFR][1000 genomes]
rs4425370	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593130	1.00[ASN][1000 genomes]
rs55712235	0.82[EUR][1000 genomes]
rs55880619	0.90[EUR][1000 genomes]
rs55964721	0.90[EUR][1000 genomes]
rs60467454	0.86[AFR][1000 genomes]
rs62296870	0.89[ASN][1000 genomes]
rs6826516	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6846330	1.00[ASN][1000 genomes]
rs6846645	1.00[ASN][1000 genomes]
rs6857775	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73092968	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73099625	0.83[AFR][1000 genomes]
rs73099627	0.83[AFR][1000 genomes]
rs73099628	0.92[AFR][1000 genomes]
rs73249357	1.00[ASN][1000 genomes]
rs73249365	1.00[ASN][1000 genomes]
rs73249369	1.00[ASN][1000 genomes]
rs73249379	1.00[ASN][1000 genomes]
rs73249381	1.00[ASN][1000 genomes]
rs7666136	1.00[ASN][1000 genomes]
rs7681473	0.89[ASN][1000 genomes]
rs7682588	1.00[ASN][1000 genomes]
rs7686699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291401	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9997444	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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