Variant report

Variant	rs73099627
Chromosome Location	chr4:19522908-19522909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10001562	0.97[AFR][1000 genomes]
rs10017144	0.82[AFR][1000 genomes]
rs10024291	0.84[AFR][1000 genomes]
rs10026163	0.81[AFR][1000 genomes]
rs10027111	0.83[AFR][1000 genomes]
rs10031839	0.83[AFR][1000 genomes]
rs28674625	0.80[AFR][1000 genomes]
rs4371613	0.84[AFR][1000 genomes]
rs60467454	0.97[AFR][1000 genomes]
rs73095463	0.83[AFR][1000 genomes]
rs73097361	0.81[AFR][1000 genomes]
rs73099625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73099628	0.84[AFR][1000 genomes]
rs7686699	0.83[AFR][1000 genomes]
rs9997444	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3464356	chr4:19519454-19523952	Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3323853	chr4:19520254-19523202	Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3464358	chr4:19520379-19523427	Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3398614	chr4:19520704-19523102	Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv593788	chr4:19521736-19535243	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
11	nsv593789	chr4:19521736-19541708	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19522200-19523000	Enhancers	Brain Hippocampus Middle	brain
2	chr4:19522200-19523000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr4:19522200-19523000	Enhancers	Fetal Brain Female	brain
4	chr4:19522400-19523000	Enhancers	Brain Cingulate Gyrus	brain
5	chr4:19522600-19523000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:19522600-19523000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:19522600-19523200	Enhancers	Brain Substantia Nigra	brain
8	chr4:19522600-19523800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:19522800-19523000	Enhancers	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links