Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10017144	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10024291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025939	1.00[ASN][1000 genomes]
rs10027111	0.89[AFR][1000 genomes]
rs10031839	0.89[AFR][1000 genomes]
rs11942433	0.82[ASN][1000 genomes]
rs28674625	0.86[AFR][1000 genomes]
rs4371613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296870	0.82[ASN][1000 genomes]
rs6853029	0.82[ASN][1000 genomes]
rs73092968	0.81[AFR][1000 genomes]
rs73099625	0.81[AFR][1000 genomes]
rs73099627	0.81[AFR][1000 genomes]
rs73099628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675070	0.84[ASN][1000 genomes]
rs7681473	0.82[ASN][1000 genomes]
rs7682042	0.84[ASN][1000 genomes]
rs7682477	1.00[ASN][1000 genomes]
rs7686699	0.89[AFR][1000 genomes]
rs9997444	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv593788	chr4:19521736-19535243	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv593789	chr4:19521736-19541708	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	esv1830015	chr4:19523949-19545872	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19533000-19536600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:19533200-19536400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:19533400-19534400	Enhancers	Fetal Muscle Leg	muscle
4	chr4:19533600-19534000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:19533600-19534000	Enhancers	Brain Substantia Nigra	brain
6	chr4:19533600-19535200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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