Variant report

Variant	rs10025939
Chromosome Location	chr4:19616649-19616650
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10017144	0.91[ASN][1000 genomes]
rs10024291	1.00[ASN][1000 genomes]
rs10026163	1.00[ASN][1000 genomes]
rs11942433	0.82[ASN][1000 genomes]
rs2200748	0.97[EUR][1000 genomes]
rs4371613	1.00[ASN][1000 genomes]
rs4593130	1.00[EUR][1000 genomes]
rs62296870	0.82[ASN][1000 genomes]
rs6853029	0.82[ASN][1000 genomes]
rs73099628	1.00[ASN][1000 genomes]
rs73249379	0.83[EUR][1000 genomes]
rs73249381	1.00[EUR][1000 genomes]
rs7675070	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7681473	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7682042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7682477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682588	1.00[EUR][1000 genomes]
rs9997444	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1001485	chr4:19585423-19655316	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1013517	chr4:19611067-19655316	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv518929	chr4:19616649-19629309	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19616000-19617000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:19616000-19617000	Enhancers	HMEC	breast
3	chr4:19616600-19617200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:19616600-19617400	ZNF genes & repeats	Aorta	Aorta
5	chr4:19616600-19617600	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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