Variant report

Variant	rs10001746
Chromosome Location	chr4:141948889-141948890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10213645	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17425634	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28445273	0.84[EUR][1000 genomes]
rs28627758	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9997698	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:141943200-141949200	Weak transcription	Ovary	ovary
3	chr4:141944000-141953200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:141946800-141951000	Enhancers	Colon Smooth Muscle	Colon
5	chr4:141947000-141949800	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:141947200-141949600	Enhancers	Fetal Stomach	stomach
7	chr4:141947400-141949200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr4:141947600-141949000	Enhancers	Fetal Muscle Leg	muscle
9	chr4:141947600-141950800	Enhancers	Fetal Heart	heart
10	chr4:141948000-141949400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:141948000-141949800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:141948000-141950000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:141948000-141950000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:141948000-141950600	Enhancers	Fetal Lung	lung
15	chr4:141948200-141949400	Enhancers	NHLF	lung
16	chr4:141948200-141949600	Enhancers	Psoas Muscle	Psoas
17	chr4:141948400-141949600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:141948400-141956400	Weak transcription	Left Ventricle	heart
19	chr4:141948600-141949400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:141948600-141949600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:141948600-141949600	Enhancers	Adipose Nuclei	Adipose
22	chr4:141948600-141949600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr4:141948600-141949800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:141948600-141949800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr4:141948600-141949800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr4:141948600-141949800	Enhancers	NHEK	skin
27	chr4:141948600-141950000	Enhancers	NH-A	brain
28	chr4:141948600-141950200	Enhancers	Osteobl	bone
29	chr4:141948600-141950800	Enhancers	Fetal Brain Male	brain
30	chr4:141948800-141949000	Enhancers	Fetal Kidney	kidney
31	chr4:141948800-141949000	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr4:141948800-141949400	Enhancers	Hela-S3	cervix
33	chr4:141948800-141949600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:141948800-141949800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:141948800-141949800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:141948800-141949800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:141948800-141949800	Enhancers	Liver	Liver
38	chr4:141948800-141949800	Enhancers	HSMMtube	muscle
39	chr4:141948800-141950600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:141948800-141950600	Enhancers	NHDF-Ad	bronchial

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