Variant report

Variant	rs10003394
Chromosome Location	chr4:21494799-21494800
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10002399	0.86[AFR][1000 genomes]
rs10003390	0.88[AFR][1000 genomes]
rs10007854	0.88[AFR][1000 genomes]
rs10014758	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017100	0.85[AFR][1000 genomes]
rs10019808	0.88[AFR][1000 genomes]
rs10020195	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025003	0.88[AFR][1000 genomes]
rs10516390	0.85[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12643431	0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs12648670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1460482	0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs1460483	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs1495514	0.88[AFR][1000 genomes]
rs1495515	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563874	0.89[ASN][1000 genomes]
rs16871190	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16871192	0.88[AFR][1000 genomes]
rs16871195	0.87[AFR][1000 genomes]
rs16871197	0.86[AFR][1000 genomes]
rs16871198	0.88[AFR][1000 genomes]
rs16871214	0.87[AFR][1000 genomes]
rs16871216	0.88[AFR][1000 genomes]
rs16871218	0.88[AFR][1000 genomes]
rs16871238	0.85[AFR][1000 genomes]
rs16871240	0.85[AFR][1000 genomes]
rs16871245	0.85[CHB][hapmap];0.89[ASN][1000 genomes]
rs17307875	0.86[AFR][1000 genomes]
rs1841368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841369	0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1903321	0.82[AFR][1000 genomes]
rs28374981	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28493029	0.82[AFR][1000 genomes]
rs28507957	0.85[AFR][1000 genomes]
rs28533854	0.88[AFR][1000 genomes]
rs28545343	0.87[AFR][1000 genomes]
rs28558494	0.88[AFR][1000 genomes]
rs28590371	0.82[AFR][1000 genomes]
rs28594450	0.88[AFR][1000 genomes]
rs28594626	0.88[AFR][1000 genomes]
rs28608541	0.88[AFR][1000 genomes]
rs28621776	0.86[AFR][1000 genomes]
rs28635194	0.88[AFR][1000 genomes]
rs28659186	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673434	0.82[AFR][1000 genomes]
rs358554	0.86[ASN][1000 genomes]
rs5022624	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57230257	0.89[ASN][1000 genomes]
rs6820184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826428	0.88[AFR][1000 genomes]
rs6827314	0.88[AFR][1000 genomes]
rs6845225	0.85[AFR][1000 genomes]
rs9991409	0.88[AFR][1000 genomes]
rs9991717	0.88[AFR][1000 genomes]
rs9994969	0.88[AFR][1000 genomes]
rs9996581	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527163	chr4:21490361-21494981	Strong transcription Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	nsv963592	chr4:21492023-21497203	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
6	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv878750	chr4:21492445-21520250	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv527678	chr4:21494694-21494981	Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21494400-21495800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links