Variant report
| Variant | rs9996581 |
|---|---|
| Chromosome Location | chr4:21491631-21491632 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10003394 | 0.89[ASN][1000 genomes] |
| rs10014758 | 0.89[ASN][1000 genomes] |
| rs10020195 | 0.89[ASN][1000 genomes] |
| rs10026331 | 0.86[YRI][hapmap] |
| rs10516390 | 1.00[ASN][1000 genomes] |
| rs12643431 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12648670 | 0.89[ASN][1000 genomes] |
| rs1460482 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1460483 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1495515 | 0.89[ASN][1000 genomes] |
| rs1563874 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16871190 | 0.86[ASN][1000 genomes] |
| rs16871245 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1841368 | 0.89[ASN][1000 genomes] |
| rs1841369 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28374981 | 0.89[ASN][1000 genomes] |
| rs28556276 | 1.00[EUR][1000 genomes] |
| rs28659186 | 0.89[ASN][1000 genomes] |
| rs28684641 | 1.00[EUR][1000 genomes] |
| rs28778642 | 1.00[EUR][1000 genomes] |
| rs358554 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs358587 | 1.00[EUR][1000 genomes] |
| rs5022624 | 0.89[ASN][1000 genomes] |
| rs57230257 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6820184 | 0.89[ASN][1000 genomes] |
| rs6855143 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013365 | chr4:20834054-21609078 | Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv829879 | chr4:21418568-21611002 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv998481 | chr4:21421945-21608805 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv527163 | chr4:21490361-21494981 | Strong transcription Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21487600-21492600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
