Variant report

Variant	rs16871190
Chromosome Location	chr4:21491230-21491231
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10002399	0.96[AFR][1000 genomes]
rs10003390	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs10003394	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10007854	0.99[AFR][1000 genomes]
rs10014758	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10017100	0.94[AFR][1000 genomes]
rs10019808	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs10020195	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10025003	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs10030329	1.00[CHB][hapmap];0.86[AFR][1000 genomes]
rs10516390	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12643431	0.86[ASN][1000 genomes]
rs12648670	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1460482	0.86[ASN][1000 genomes]
rs1460483	0.86[ASN][1000 genomes]
rs1495514	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs1495515	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1563874	0.86[ASN][1000 genomes]
rs16871192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs16871195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes]
rs16871197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes]
rs16871198	0.99[AFR][1000 genomes]
rs16871214	1.00[JPT][hapmap];0.97[AFR][1000 genomes]
rs16871216	0.99[AFR][1000 genomes]
rs16871218	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs16871238	0.94[AFR][1000 genomes]
rs16871240	1.00[JPT][hapmap];0.94[AFR][1000 genomes]
rs16871241	1.00[JPT][hapmap];0.89[AFR][1000 genomes]
rs16871245	0.86[ASN][1000 genomes]
rs17307875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes]
rs1841368	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1841369	0.86[ASN][1000 genomes]
rs1903321	1.00[JPT][hapmap];0.92[AFR][1000 genomes]
rs28374981	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28493029	0.92[AFR][1000 genomes]
rs28507957	0.94[AFR][1000 genomes]
rs28533854	0.99[AFR][1000 genomes]
rs28545343	0.97[AFR][1000 genomes]
rs28558494	0.99[AFR][1000 genomes]
rs28590371	0.92[AFR][1000 genomes]
rs28594450	0.99[AFR][1000 genomes]
rs28594626	0.99[AFR][1000 genomes]
rs28608541	0.99[AFR][1000 genomes]
rs28621776	0.96[AFR][1000 genomes]
rs28635194	0.99[AFR][1000 genomes]
rs28659186	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28673434	0.92[AFR][1000 genomes]
rs358554	0.83[ASN][1000 genomes]
rs5022624	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57230257	0.86[ASN][1000 genomes]
rs6820184	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6826428	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs6827314	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs6845225	1.00[JPT][hapmap];0.94[AFR][1000 genomes]
rs9991409	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs9991717	1.00[JPT][hapmap];0.99[AFR][1000 genomes]
rs9994969	0.99[AFR][1000 genomes]
rs9996581	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527163	chr4:21490361-21494981	Strong transcription Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21487600-21492600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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