Variant report

Variant	rs10516390
Chromosome Location	chr4:21504820-21504821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10003394	0.85[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10013001	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10013379	1.00[TSI][hapmap]
rs10014758	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10020195	0.92[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10025003	1.00[TSI][hapmap]
rs10027808	1.00[TSI][hapmap]
rs12643431	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12648670	0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs1380815	0.85[CHB][hapmap]
rs1460481	1.00[TSI][hapmap]
rs1460482	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1460483	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1495514	1.00[TSI][hapmap]
rs1495515	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1563874	1.00[ASN][1000 genomes]
rs16871190	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16871218	1.00[TSI][hapmap]
rs16871245	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16871264	0.91[YRI][hapmap]
rs16871289	1.00[TSI][hapmap]
rs16871372	1.00[TSI][hapmap]
rs16871434	1.00[TSI][hapmap]
rs16871591	1.00[TSI][hapmap]
rs1841368	0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1841369	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs1903321	1.00[TSI][hapmap]
rs28374981	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28659186	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs358554	0.97[ASN][1000 genomes]
rs4441742	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs5022624	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57230257	1.00[ASN][1000 genomes]
rs6820184	0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6827314	1.00[TSI][hapmap]
rs6855143	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9291427	0.85[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap]
rs9991409	1.00[TSI][hapmap]
rs9991717	1.00[TSI][hapmap]
rs9996581	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv878750	chr4:21492445-21520250	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21497000-21514200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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