Variant report

Variant	rs10010230
Chromosome Location	chr4:150984698-150984699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:150979256..150981636-chr4:150983674..150986662,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10004846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10005584	1.00[AMR][1000 genomes]
rs10017930	1.00[AMR][1000 genomes]
rs10020062	1.00[AMR][1000 genomes]
rs10027651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027751	1.00[AMR][1000 genomes]
rs10028697	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034848	1.00[AMR][1000 genomes]
rs17026536	1.00[AMR][1000 genomes]
rs17026554	1.00[AMR][1000 genomes]
rs28388272	1.00[AMR][1000 genomes]
rs28444418	1.00[AMR][1000 genomes]
rs28480105	1.00[AMR][1000 genomes]
rs28485405	1.00[AMR][1000 genomes]
rs28499214	1.00[AMR][1000 genomes]
rs28501392	1.00[AFR][1000 genomes]
rs28504685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28515804	1.00[AMR][1000 genomes]
rs28550278	1.00[AMR][1000 genomes]
rs28556283	1.00[AMR][1000 genomes]
rs28594968	0.81[AFR][1000 genomes]
rs28661715	1.00[AMR][1000 genomes]
rs28670248	1.00[AMR][1000 genomes]
rs28723057	1.00[AMR][1000 genomes]
rs59211006	1.00[AMR][1000 genomes]
rs6825651	0.81[AFR][1000 genomes]
rs6826061	1.00[AMR][1000 genomes]
rs73860533	1.00[AMR][1000 genomes]
rs73860536	1.00[AMR][1000 genomes]
rs73860928	1.00[AMR][1000 genomes]
rs7681080	1.00[AMR][1000 genomes]
rs7698116	1.00[AMR][1000 genomes]
rs9992316	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150982600-150985600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:150982800-150985000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:150983000-150985000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:150983000-150990800	Weak transcription	NHDF-Ad	bronchial
5	chr4:150983600-150985400	Enhancers	Adipose Nuclei	Adipose
6	chr4:150984000-150985000	Enhancers	HSMMtube	muscle
7	chr4:150984200-150984800	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr4:150984400-150984800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:150984600-150984800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr4:150984600-150985000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:150984600-150985000	Flanking Active TSS	Fetal Heart	heart

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