Variant report

Variant	rs28661715
Chromosome Location	chr4:151010298-151010299
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10004846	1.00[AMR][1000 genomes]
rs10005584	1.00[AMR][1000 genomes]
rs10010230	1.00[AMR][1000 genomes]
rs10017930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020062	1.00[AMR][1000 genomes]
rs10027651	1.00[AMR][1000 genomes]
rs10027751	1.00[AMR][1000 genomes]
rs10028697	1.00[AMR][1000 genomes]
rs10034848	1.00[AMR][1000 genomes]
rs17026536	1.00[AMR][1000 genomes]
rs17026554	1.00[AMR][1000 genomes]
rs28388272	1.00[AMR][1000 genomes]
rs28444418	1.00[AMR][1000 genomes]
rs28480105	1.00[AMR][1000 genomes]
rs28485405	1.00[AMR][1000 genomes]
rs28499214	1.00[AMR][1000 genomes]
rs28504685	1.00[AMR][1000 genomes]
rs28515804	1.00[AMR][1000 genomes]
rs28550278	1.00[AMR][1000 genomes]
rs28556283	1.00[AMR][1000 genomes]
rs28670248	1.00[AMR][1000 genomes]
rs28723057	1.00[AMR][1000 genomes]
rs34662958	1.00[AMR][1000 genomes]
rs59211006	1.00[AMR][1000 genomes]
rs6826061	1.00[AMR][1000 genomes]
rs73860533	1.00[AMR][1000 genomes]
rs73860536	1.00[AMR][1000 genomes]
rs73860928	1.00[AMR][1000 genomes]
rs7681080	1.00[AMR][1000 genomes]
rs7698116	1.00[AMR][1000 genomes]
rs9992316	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151001000-151020000	Weak transcription	Aorta	Aorta
2	chr4:151002000-151011800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:151002000-151012000	Weak transcription	Fetal Lung	lung
4	chr4:151002000-151026200	Weak transcription	Left Ventricle	heart
5	chr4:151002400-151016600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:151002600-151010600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:151002600-151012000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:151003000-151024200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:151004400-151019000	Weak transcription	Osteobl	bone
10	chr4:151004400-151019200	Weak transcription	Fetal Heart	heart
11	chr4:151004600-151018000	Weak transcription	A549	lung
12	chr4:151005600-151013200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:151006200-151010400	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:151006400-151019000	Weak transcription	HSMM	muscle
15	chr4:151007200-151017000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:151009200-151011800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:151010200-151011000	Weak transcription	Brain Germinal Matrix	brain

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