Variant report

Variant	rs28499214
Chromosome Location	chr4:150961672-150961673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10004846	1.00[AMR][1000 genomes]
rs10005584	1.00[AMR][1000 genomes]
rs10010230	1.00[AMR][1000 genomes]
rs10017930	1.00[AMR][1000 genomes]
rs10020062	1.00[AMR][1000 genomes]
rs10027651	1.00[AMR][1000 genomes]
rs10027751	1.00[AMR][1000 genomes]
rs10028697	1.00[AMR][1000 genomes]
rs10034848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026536	1.00[AMR][1000 genomes]
rs17026554	1.00[AMR][1000 genomes]
rs28388272	1.00[AMR][1000 genomes]
rs28444418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28480105	1.00[AMR][1000 genomes]
rs28485405	1.00[AMR][1000 genomes]
rs28504685	1.00[AMR][1000 genomes]
rs28515804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28550278	1.00[AMR][1000 genomes]
rs28556283	1.00[AMR][1000 genomes]
rs28661715	1.00[AMR][1000 genomes]
rs28670248	1.00[AMR][1000 genomes]
rs28723057	1.00[AMR][1000 genomes]
rs59211006	1.00[AMR][1000 genomes]
rs6826061	1.00[AMR][1000 genomes]
rs73860533	1.00[AMR][1000 genomes]
rs73860536	1.00[AMR][1000 genomes]
rs73860928	1.00[AMR][1000 genomes]
rs7681080	1.00[AMR][1000 genomes]
rs7698116	1.00[AMR][1000 genomes]
rs9992316	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150955200-150967800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:150955400-150965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:150955400-150967800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:150958600-150962000	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:150960400-150962000	Enhancers	Primary B cells from cord blood	blood
6	chr4:150960600-150963000	Enhancers	Brain Germinal Matrix	brain
7	chr4:150961200-150962800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:150961600-150962600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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