Variant report

Variant	rs10010950
Chromosome Location	chr4:151574839-151574840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10003085	0.86[JPT][hapmap]
rs10008675	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10011917	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10025414	0.92[GIH][hapmap]
rs10027710	0.88[CEU][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap]
rs10520078	1.00[CEU][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.81[TSI][hapmap]
rs11099769	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11099770	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11099772	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1148656	0.86[JPT][hapmap]
rs12499524	0.83[EUR][1000 genomes]
rs12503291	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12505967	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs12508892	0.87[CEU][hapmap];0.92[GIH][hapmap]
rs12510904	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13105060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13108157	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13145482	1.00[CEU][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap]
rs13147825	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1470763	1.00[CEU][hapmap]
rs186080	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs294532	0.81[GIH][hapmap]
rs4309819	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4318628	0.86[ASW][hapmap];0.88[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.87[JPT][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]
rs4336204	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4336207	0.82[CHD][hapmap];0.84[GIH][hapmap];0.87[JPT][hapmap]
rs4355367	0.92[GIH][hapmap]
rs4417951	0.87[CEU][hapmap]
rs4435730	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4533751	0.92[GIH][hapmap]
rs4577554	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4585281	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4642231	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4696220	0.84[GIH][hapmap]
rs4696463	0.83[EUR][1000 genomes]
rs6826066	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6835367	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6836017	0.87[GIH][hapmap]
rs6847725	0.92[GIH][hapmap]
rs6858706	0.92[JPT][hapmap]
rs7657997	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs868664	0.83[EUR][1000 genomes]
rs9884181	0.82[CHD][hapmap];0.84[GIH][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv880261	chr4:151521933-151588483	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151533400-151596200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:151554800-151585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:151555800-151585600	Weak transcription	Primary B cells from cord blood	blood
5	chr4:151559200-151577000	Weak transcription	Primary T cells from cord blood	blood
6	chr4:151559400-151578200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:151571200-151601600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:151571200-151604600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:151573200-151583800	Weak transcription	Lung	lung
10	chr4:151574200-151576400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:151574800-151601200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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