Variant report

Variant	rs12510904
Chromosome Location	chr4:151536134-151536135
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151527915..151530188-chr4:151535611..151537674,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10003085	0.86[JPT][hapmap]
rs10008675	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010950	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10011917	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10027710	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs10520078	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs11099769	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099770	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12499524	0.84[EUR][1000 genomes]
rs12503291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505967	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs13105060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13108157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145482	0.88[CEU][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap]
rs13147825	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1470763	0.88[CEU][hapmap]
rs4309819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4318628	1.00[CEU][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap]
rs4336204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336207	0.87[JPT][hapmap]
rs4435730	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4577554	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585281	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4642231	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696463	0.84[EUR][1000 genomes]
rs6826066	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6858706	0.93[JPT][hapmap]
rs7657997	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868664	0.84[EUR][1000 genomes]
rs9884181	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1018942	chr4:151423295-151556444	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537301	chr4:151423295-151556444	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv880261	chr4:151521933-151588483	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151500000-151543400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:151501200-151559800	Weak transcription	Ovary	ovary
4	chr4:151505400-151542200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:151509800-151540200	Weak transcription	GM12878-XiMat	blood
6	chr4:151511000-151542800	Weak transcription	K562	blood
7	chr4:151512400-151556000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:151512800-151550800	Weak transcription	Fetal Intestine Small	intestine
9	chr4:151520400-151540200	Weak transcription	Fetal Intestine Large	intestine
10	chr4:151520400-151541200	Weak transcription	Aorta	Aorta
11	chr4:151520400-151556200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:151520600-151538600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:151520600-151539600	Weak transcription	Left Ventricle	heart
14	chr4:151520600-151540400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:151520600-151540400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:151520600-151540400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:151520600-151540600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:151520600-151540800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:151520600-151543200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:151520600-151553800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:151522600-151539600	Weak transcription	Psoas Muscle	Psoas
22	chr4:151531000-151553600	Weak transcription	Primary B cells from cord blood	blood
23	chr4:151533400-151553800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:151533400-151596200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:151534000-151537200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:151534600-151537400	Strong transcription	Primary T cells from cord blood	blood
27	chr4:151534800-151537800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:151535200-151537000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:151536000-151536200	Enhancers	Colon Smooth Muscle	Colon

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