Variant report

Variant	rs10011076
Chromosome Location	chr4:95127000-95127001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10007571	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014367	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034816	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213096	1.00[AMR][1000 genomes]
rs28483872	1.00[AMR][1000 genomes]
rs28497628	1.00[AMR][1000 genomes]
rs28539776	1.00[AMR][1000 genomes]
rs28548547	1.00[AMR][1000 genomes]
rs28573143	1.00[AMR][1000 genomes]
rs28587635	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627334	1.00[AMR][1000 genomes]
rs28767238	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28794639	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28805388	1.00[AMR][1000 genomes]
rs61301932	1.00[AMR][1000 genomes]
rs61519851	1.00[AMR][1000 genomes]
rs7356258	1.00[AMR][1000 genomes]
rs9993132	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95119800-95128600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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