Variant report

Variant	rs28794639
Chromosome Location	chr4:95073587-95073588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10007571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10011076	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10014367	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213096	1.00[AMR][1000 genomes]
rs28483872	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497628	1.00[AMR][1000 genomes]
rs28539776	1.00[AMR][1000 genomes]
rs28548547	1.00[AMR][1000 genomes]
rs28573143	1.00[AMR][1000 genomes]
rs28587635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627334	1.00[AMR][1000 genomes]
rs28767238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28805388	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61301932	1.00[AMR][1000 genomes]
rs61519851	1.00[AMR][1000 genomes]
rs7356258	1.00[AMR][1000 genomes]
rs9993132	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv879621	chr4:95046907-95099194	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95070200-95073600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:95073400-95073600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:95073400-95073600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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