Variant report

Variant	rs28497628
Chromosome Location	chr4:95168978-95168979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95167803..95169759-chr4:95172973..95174736,2	K562	blood:

Variant related genes	Relation type
ENSG00000163104	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10007571	1.00[AMR][1000 genomes]
rs10011076	1.00[AMR][1000 genomes]
rs10014367	1.00[AMR][1000 genomes]
rs10034816	1.00[AMR][1000 genomes]
rs10213096	1.00[AMR][1000 genomes]
rs28483872	1.00[AMR][1000 genomes]
rs28539776	1.00[AMR][1000 genomes]
rs28548547	1.00[AMR][1000 genomes]
rs28573143	1.00[AMR][1000 genomes]
rs28587635	1.00[AMR][1000 genomes]
rs28627334	1.00[AMR][1000 genomes]
rs28767238	1.00[AMR][1000 genomes]
rs28794639	1.00[AMR][1000 genomes]
rs28805388	1.00[AMR][1000 genomes]
rs61301932	1.00[AMR][1000 genomes]
rs61519851	1.00[AMR][1000 genomes]
rs7356258	1.00[AMR][1000 genomes]
rs9993132	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv1850963	chr4:95146281-95175682	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95130000-95176000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
3	chr4:95130200-95194000	Weak transcription	Gastric	stomach
4	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
5	chr4:95131600-95198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:95131800-95169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:95136600-95174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:95145400-95175000	Strong transcription	Dnd41	blood
10	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:95146600-95175800	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:95148000-95169400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:95148200-95180800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:95151600-95170400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr4:95152200-95202000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:95152600-95174400	Weak transcription	Brain Angular Gyrus	brain
20	chr4:95153000-95169800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:95154200-95173000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:95154600-95175800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr4:95155000-95177400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:95155200-95169600	Strong transcription	NH-A	brain
25	chr4:95155400-95169200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr4:95155400-95175800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:95155600-95169200	Strong transcription	Fetal Lung	lung
28	chr4:95155800-95169200	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr4:95157600-95172800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:95158000-95169400	Strong transcription	Liver	Liver
31	chr4:95158000-95172600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:95158200-95173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
34	chr4:95158600-95172600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:95159200-95169600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:95160600-95169400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr4:95161000-95169400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr4:95161000-95172800	Strong transcription	HUVEC	blood vessel
39	chr4:95161400-95175000	Strong transcription	HSMM	muscle
40	chr4:95161400-95207000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr4:95162000-95170200	Strong transcription	Primary T cells from cord blood	blood
42	chr4:95162400-95169000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:95162800-95192000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr4:95163000-95172000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:95163000-95200200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr4:95163000-95210200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr4:95163600-95173400	Weak transcription	Small Intestine	intestine
48	chr4:95164400-95173400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:95164400-95202800	Weak transcription	Pancreas	Pancrea
50	chr4:95164600-95173800	Weak transcription	Stomach Smooth Muscle	stomach

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