Variant report

Variant	rs10213096
Chromosome Location	chr4:95151680-95151681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:95149746..95151767-chr4:95154549..95156118,2	K562	blood:
2	chr4:95151162..95153621-chr4:95153761..95157182,3	MCF-7	breast:
3	chr4:95149538..95151966-chr4:95163560..95166301,2	K562	blood:
4	chr4:89205783..89207731-chr4:95150954..95153219,2	K562	blood:
5	chr4:95127424..95132801-chr4:95147153..95153356,7	K562	blood:
6	chr4:95136830..95141746-chr4:95150101..95153393,4	K562	blood:

Variant related genes	Relation type
ENSG00000246541	Chromatin interaction
ENSG00000246375	Chromatin interaction
ENSG00000163104	Chromatin interaction
ENSG00000163644	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10007571	1.00[AMR][1000 genomes]
rs10011076	1.00[AMR][1000 genomes]
rs10014367	1.00[AMR][1000 genomes]
rs10034816	1.00[AMR][1000 genomes]
rs28483872	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497628	1.00[AMR][1000 genomes]
rs28539776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28573143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587635	1.00[AMR][1000 genomes]
rs28627334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28767238	1.00[AMR][1000 genomes]
rs28794639	1.00[AMR][1000 genomes]
rs28805388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58386866	0.87[AFR][1000 genomes]
rs61301932	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61519851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv1850963	chr4:95146281-95175682	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95129800-95161800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:95130000-95176000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:95130200-95162600	Weak transcription	Pancreas	Pancrea
4	chr4:95130200-95162600	Weak transcription	Small Intestine	intestine
5	chr4:95130200-95164000	Weak transcription	Spleen	Spleen
6	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
7	chr4:95130200-95194000	Weak transcription	Gastric	stomach
8	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
9	chr4:95130400-95152000	Weak transcription	Brain Angular Gyrus	brain
10	chr4:95131200-95164400	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:95131600-95157200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:95131600-95198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:95131800-95161600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:95131800-95169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:95134800-95162400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:95134800-95162800	Weak transcription	Hela-S3	cervix
17	chr4:95135200-95162600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:95135200-95162800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:95135800-95160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:95136400-95157600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:95136600-95164800	Weak transcription	Fetal Brain Male	brain
22	chr4:95136600-95174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:95136800-95162600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:95137400-95162400	Weak transcription	Ovary	ovary
25	chr4:95137400-95162600	Weak transcription	Thymus	Thymus
26	chr4:95137400-95162800	Weak transcription	Psoas Muscle	Psoas
27	chr4:95137600-95162600	Weak transcription	Aorta	Aorta
28	chr4:95138000-95161400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:95138200-95162400	Weak transcription	HSMMtube	muscle
30	chr4:95138400-95164200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:95138800-95161600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:95140200-95167000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:95141000-95151800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:95141000-95151800	Weak transcription	Brain Substantia Nigra	brain
36	chr4:95141000-95164400	Weak transcription	A549	lung
37	chr4:95141200-95157000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:95141600-95162200	Weak transcription	Fetal Brain Female	brain
39	chr4:95142000-95153000	Weak transcription	Fetal Stomach	stomach
40	chr4:95142000-95159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:95142200-95152000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:95142200-95164200	Weak transcription	NHLF	lung
43	chr4:95142800-95160800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr4:95143200-95151800	Weak transcription	Brain Anterior Caudate	brain
45	chr4:95143400-95151800	Weak transcription	Liver	Liver
46	chr4:95143400-95162200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:95143600-95154000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:95145000-95153000	Weak transcription	Fetal Intestine Small	intestine
49	chr4:95145400-95175000	Strong transcription	Dnd41	blood
50	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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