Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10019007	0.80[AFR][1000 genomes]
rs10021391	0.80[AFR][1000 genomes]
rs10022493	0.80[AFR][1000 genomes]
rs11100946	0.80[AFR][1000 genomes]
rs11100947	0.80[AFR][1000 genomes]
rs13104597	0.80[AFR][1000 genomes]
rs13115689	0.80[AFR][1000 genomes]
rs1354886	0.80[AFR][1000 genomes]
rs1395817	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1948969	0.83[AFR][1000 genomes]
rs2202701	0.80[AFR][1000 genomes]
rs2221601	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2357615	0.80[AFR][1000 genomes]
rs2357616	0.80[AFR][1000 genomes]
rs2562857	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2714894	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2714895	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2714899	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2953289	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4339188	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4835385	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56666042	0.80[ASN][1000 genomes]
rs58585596	0.85[ASN][1000 genomes]
rs6822622	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6832238	0.83[AFR][1000 genomes]
rs73853384	0.85[ASN][1000 genomes]
rs73853385	0.89[ASN][1000 genomes]
rs7656015	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv3449284	chr4:148183228-148183484	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148183000-148205600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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