Variant report

Variant	rs58585596
Chromosome Location	chr4:148093543-148093544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10014781	0.85[ASN][1000 genomes]
rs1395817	0.94[ASN][1000 genomes]
rs2221601	0.88[ASN][1000 genomes]
rs2714899	0.84[ASN][1000 genomes]
rs4339188	0.91[ASN][1000 genomes]
rs4835385	0.91[ASN][1000 genomes]
rs56666042	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58665736	0.87[ASN][1000 genomes]
rs6822622	0.89[ASN][1000 genomes]
rs73853376	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73853384	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73853385	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7656015	0.89[ASN][1000 genomes]
rs952687	0.92[AMR][1000 genomes]
rs952688	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148092800-148094800	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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