Variant report

Variant	rs56666042
Chromosome Location	chr4:148082335-148082336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10014781	0.80[ASN][1000 genomes]
rs1395817	0.89[ASN][1000 genomes]
rs2221601	0.83[ASN][1000 genomes]
rs4339188	0.86[ASN][1000 genomes]
rs4835385	0.86[ASN][1000 genomes]
rs58585596	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58665736	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6822622	0.84[ASN][1000 genomes]
rs73853376	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73853384	0.95[ASN][1000 genomes]
rs73853385	0.91[ASN][1000 genomes]
rs7656015	0.84[ASN][1000 genomes]
rs952688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148080000-148083600	Weak transcription	Fetal Heart	heart
2	chr4:148080000-148084000	Weak transcription	Fetal Stomach	stomach
3	chr4:148080000-148084400	Weak transcription	Right Atrium	heart
4	chr4:148080200-148088800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:148080400-148084400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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