Variant report

Variant	rs10016824
Chromosome Location	chr4:125728821-125728822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10015945	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10029225	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11946561	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1395331	0.89[ASN][1000 genomes]
rs1483609	0.96[ASN][1000 genomes]
rs1848058	0.92[ASN][1000 genomes]
rs4000845	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6534451	0.90[ASN][1000 genomes]
rs6840967	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs724749	0.97[ASN][1000 genomes]
rs7657250	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307552	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv15885	chr4:125727333-125730018	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125726600-125731400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:125726800-125731200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:125728200-125729400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:125728400-125729000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:125728600-125729400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:125728800-125729200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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