Variant report
| Variant | rs1483609 |
|---|---|
| Chromosome Location | chr4:125738118-125738119 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10015945 | 0.98[ASN][1000 genomes] |
| rs10016824 | 0.96[ASN][1000 genomes] |
| rs10029225 | 0.98[ASN][1000 genomes] |
| rs11946561 | 0.98[ASN][1000 genomes] |
| rs1395331 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1483610 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1825346 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1825347 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1848056 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1848058 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1911132 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2135478 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2174620 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4000845 | 0.97[ASN][1000 genomes] |
| rs4833307 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6534451 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6840967 | 0.94[ASN][1000 genomes] |
| rs724749 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7657250 | 0.93[ASN][1000 genomes] |
| rs9307552 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9997902 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879883 | chr4:125732734-125767985 | Enhancers ZNF genes & repeats Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125724600-125759600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
