Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10015945	0.92[ASN][1000 genomes]
rs10016824	0.90[ASN][1000 genomes]
rs10029225	0.92[ASN][1000 genomes]
rs11946561	0.92[ASN][1000 genomes]
rs1395331	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1483609	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1483610	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1825346	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1825347	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1848056	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1848058	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1911132	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2135478	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2174620	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4000845	0.91[ASN][1000 genomes]
rs4833307	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6840967	0.88[ASN][1000 genomes]
rs724749	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7657250	0.87[ASN][1000 genomes]
rs9307552	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9997902	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879883	chr4:125732734-125767985	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6534451	ANKRD50	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125755200-125763000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:125759600-125762000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:125761200-125763000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: