Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125632635..125634517-chr4:125770420..125772413,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10015945	0.91[ASN][1000 genomes]
rs10016824	0.89[ASN][1000 genomes]
rs10029225	0.91[ASN][1000 genomes]
rs11946561	0.91[ASN][1000 genomes]
rs1483609	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1483610	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1825346	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1825347	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1848056	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1848058	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1911132	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2135478	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2174620	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4000845	0.90[ASN][1000 genomes]
rs4833307	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6534451	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6840967	0.87[ASN][1000 genomes]
rs724749	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7657250	0.86[ASN][1000 genomes]
rs9307552	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997902	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1395331	ANKRD50	cis	Artery Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125768000-125773000	Weak transcription	Placenta Amnion	Placenta Amnion

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