Variant report

Variant	rs10017297
Chromosome Location	chr4:166488615-166488616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10005378	1.00[ASN][1000 genomes]
rs10028219	0.86[CHD][hapmap]
rs17046703	0.84[EUR][1000 genomes]
rs17046745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046756	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914834	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914835	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914836	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914838	1.00[ASN][1000 genomes]
rs28391070	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28428187	1.00[ASN][1000 genomes]
rs28487969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28583482	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4096263	1.00[ASN][1000 genomes]
rs6819473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659327	1.00[ASN][1000 genomes]
rs7679286	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7694281	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694612	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992314	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596052	chr4:166454826-166488615	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv964006	chr4:166487853-166491470	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166488600-166489000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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