Variant report

Variant	rs28391070
Chromosome Location	chr4:166476773-166476774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr4:166476331-166476875	HUVEC	blood vessel:	n/a	chr4:166476623-166476633 chr4:166476632-166476648 chr4:166476632-166476648
2	FOS	chr4:166476346-166476942	HUVEC	blood vessel:	n/a	chr4:166476362-166476372
3	JUN	chr4:166476509-166476907	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000248327	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10005378	1.00[ASN][1000 genomes]
rs10017297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046703	0.84[EUR][1000 genomes]
rs17046745	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046756	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914835	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914838	1.00[ASN][1000 genomes]
rs28428187	1.00[ASN][1000 genomes]
rs28487969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28583482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4096263	1.00[ASN][1000 genomes]
rs6819473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855033	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7658683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659327	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7679286	1.00[ASN][1000 genomes]
rs7694281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694612	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596052	chr4:166454826-166488615	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166475800-166477800	Enhancers	HUVEC	blood vessel
2	chr4:166476400-166476800	Enhancers	Fetal Heart	heart

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