Variant report
| Variant | rs7659327 |
|---|---|
| Chromosome Location | chr4:166478477-166478478 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10005378 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10017297 | 1.00[ASN][1000 genomes] |
| rs10028219 | 0.87[CEU][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap] |
| rs17046745 | 1.00[ASN][1000 genomes] |
| rs17046756 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1914834 | 1.00[ASN][1000 genomes] |
| rs1914835 | 1.00[ASN][1000 genomes] |
| rs1914836 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1914838 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28391070 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28428187 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28487969 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28583482 | 0.93[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4096263 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6819473 | 1.00[ASN][1000 genomes] |
| rs6831798 | 1.00[ASN][1000 genomes] |
| rs6855033 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7658683 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7679286 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7694281 | 1.00[ASN][1000 genomes] |
| rs7694612 | 1.00[ASN][1000 genomes] |
| rs9992314 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv596052 | chr4:166454826-166488615 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7659327 | COPZ2 | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:166477200-166483000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
