Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125887745..125891484-chr4:125891733..125896629,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10028180	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[EUR][1000 genomes]
rs10031663	0.86[EUR][1000 genomes]
rs11098785	0.86[EUR][1000 genomes]
rs12331172	0.92[EUR][1000 genomes]
rs12331744	0.92[EUR][1000 genomes]
rs12331747	0.92[EUR][1000 genomes]
rs12331751	0.85[EUR][1000 genomes]
rs12332053	0.92[EUR][1000 genomes]
rs12512016	0.92[EUR][1000 genomes]
rs12640347	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12640447	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs13101724	0.93[EUR][1000 genomes]
rs13113858	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs13140808	0.86[EUR][1000 genomes]
rs1483590	0.92[EUR][1000 genomes]
rs1483591	0.93[EUR][1000 genomes]
rs1548144	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[EUR][1000 genomes]
rs1846198	0.85[EUR][1000 genomes]
rs4303992	0.93[EUR][1000 genomes]
rs6534453	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs6830717	0.86[EUR][1000 genomes]
rs722548	0.93[EUR][1000 genomes]
rs722549	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125882800-125891800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125889400-125894600	Weak transcription	Fetal Heart	heart

Quick Search: