Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125633701..125635480-chr4:125900755..125903375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10018655	0.82[EUR][1000 genomes]
rs10028180	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs10031663	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098785	0.83[EUR][1000 genomes]
rs12331172	0.88[EUR][1000 genomes]
rs12331744	0.89[EUR][1000 genomes]
rs12331747	0.89[EUR][1000 genomes]
rs12331751	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332053	0.89[EUR][1000 genomes]
rs12512016	0.89[EUR][1000 genomes]
rs12640347	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12640447	0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13101724	0.88[EUR][1000 genomes]
rs13113858	0.91[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs13140808	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483590	0.89[EUR][1000 genomes]
rs1483591	0.88[EUR][1000 genomes]
rs1483606	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1548144	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs1846198	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2390744	0.81[EUR][1000 genomes]
rs4303992	0.88[EUR][1000 genomes]
rs6830717	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722548	0.88[EUR][1000 genomes]
rs722549	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125895800-125901600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125900400-125903400	Enhancers	Fetal Heart	heart
3	chr4:125901000-125901400	Enhancers	Colon Smooth Muscle	Colon
4	chr4:125901000-125901600	Enhancers	NH-A	brain
5	chr4:125901000-125901800	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:125901200-125901800	Enhancers	Osteobl	bone

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