Variant report
| Variant | rs722549 |
|---|---|
| Chromosome Location | chr4:125887441-125887442 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10018655 | 0.86[EUR][1000 genomes] |
| rs10028180 | 0.92[EUR][1000 genomes] |
| rs10031663 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11098785 | 0.86[EUR][1000 genomes] |
| rs12331172 | 0.91[EUR][1000 genomes] |
| rs12331744 | 0.92[EUR][1000 genomes] |
| rs12331747 | 0.92[EUR][1000 genomes] |
| rs12331751 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12332053 | 0.92[EUR][1000 genomes] |
| rs12512016 | 0.92[EUR][1000 genomes] |
| rs12640347 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12640447 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13101724 | 0.93[EUR][1000 genomes] |
| rs13113858 | 0.90[EUR][1000 genomes] |
| rs13140808 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1483590 | 0.92[EUR][1000 genomes] |
| rs1483591 | 0.91[EUR][1000 genomes] |
| rs1483606 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1548144 | 0.91[EUR][1000 genomes] |
| rs1846198 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2390744 | 0.84[EUR][1000 genomes] |
| rs4303992 | 0.93[EUR][1000 genomes] |
| rs6534453 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6830717 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs722548 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125882800-125891800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
