Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:125631616..125633726-chr4:125883727..125886839,4	MCF-7	breast:
2	chr4:125633862..125636702-chr4:125883831..125887270,3	MCF-7	breast:
3	chr4:125883788..125886065-chr4:126011029..126013746,2	MCF-7	breast:
4	chr4:125631407..125634222-chr4:125882635..125885809,4	MCF-7	breast:
5	chr4:125878708..125881859-chr4:125882338..125884780,4	MCF-7	breast:
6	chr4:125883634..125885656-chr4:125893409..125896639,3	MCF-7	breast:
7	chr4:125879691..125882061-chr4:125882934..125885892,2	MCF-7	breast:
8	chr4:125875190..125876989-chr4:125883949..125885613,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10018655	0.86[EUR][1000 genomes]
rs10028180	0.92[EUR][1000 genomes]
rs10031663	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098785	0.86[EUR][1000 genomes]
rs12331172	0.91[EUR][1000 genomes]
rs12331744	0.92[EUR][1000 genomes]
rs12331747	0.92[EUR][1000 genomes]
rs12331751	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12332053	0.92[EUR][1000 genomes]
rs12512016	0.92[EUR][1000 genomes]
rs12640347	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12640447	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13101724	0.93[EUR][1000 genomes]
rs13113858	0.90[EUR][1000 genomes]
rs1483590	0.92[EUR][1000 genomes]
rs1483591	0.91[EUR][1000 genomes]
rs1483606	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548144	0.91[EUR][1000 genomes]
rs1846198	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390744	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4303992	0.93[EUR][1000 genomes]
rs56354365	0.88[AFR][1000 genomes]
rs6534453	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6830717	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs722548	0.93[EUR][1000 genomes]
rs722549	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv966216	chr4:125883945-125885615	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125882800-125891800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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