Variant report

Variant	rs1483606
Chromosome Location	chr4:125880165-125880166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125866462..125869040-chr4:125880011..125881725,2	MCF-7	breast:
2	chr4:125878708..125881859-chr4:125882338..125884780,4	MCF-7	breast:
3	chr4:125879691..125882061-chr4:125882934..125885892,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10028180	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10031663	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098785	0.80[EUR][1000 genomes]
rs12331172	0.85[EUR][1000 genomes]
rs12331744	0.85[EUR][1000 genomes]
rs12331747	0.85[EUR][1000 genomes]
rs12331751	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12332053	0.85[EUR][1000 genomes]
rs12512016	0.85[EUR][1000 genomes]
rs12640347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12640447	0.84[ASW][hapmap];0.95[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13101724	0.86[EUR][1000 genomes]
rs13113858	1.00[CEU][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs13140808	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483590	0.85[EUR][1000 genomes]
rs1483591	0.85[EUR][1000 genomes]
rs1548144	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1846198	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303992	0.86[EUR][1000 genomes]
rs6534453	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6830717	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs722548	0.86[EUR][1000 genomes]
rs722549	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125878800-125881200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:125879800-125880200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:125879800-125880400	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links