Variant report

Variant	rs10019994
Chromosome Location	chr4:74544404-74544405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:74542033..74544954-chr4:74586027..74588772,2	MCF-7	breast:
2	chr4:74542484..74546380-chr4:74548286..74552440,3	K562	blood:
3	chr4:74543508..74545459-chr4:74546568..74548588,2	MCF-7	breast:
4	chr4:74541965..74543640-chr4:74544377..74546521,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1247684	1.00[ASN][1000 genomes]
rs1406499	1.00[ASN][1000 genomes]
rs1745250	1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1919480	1.00[ASN][1000 genomes]
rs2463883	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs41265663	1.00[ASN][1000 genomes]
rs41265665	1.00[ASN][1000 genomes]
rs4285054	1.00[ASN][1000 genomes]
rs4694634	1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59078835	1.00[ASN][1000 genomes]
rs59640098	1.00[ASN][1000 genomes]
rs59879767	1.00[ASN][1000 genomes]
rs6446943	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6446952	1.00[ASN][1000 genomes]
rs6813414	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6818282	1.00[ASN][1000 genomes]
rs6848823	1.00[ASN][1000 genomes]
rs6855652	1.00[ASN][1000 genomes]
rs72856634	1.00[ASN][1000 genomes]
rs72856638	1.00[ASN][1000 genomes]
rs72856640	1.00[ASN][1000 genomes]
rs72856641	1.00[ASN][1000 genomes]
rs72856648	1.00[ASN][1000 genomes]
rs72856650	1.00[ASN][1000 genomes]
rs72856656	1.00[ASN][1000 genomes]
rs72856662	1.00[ASN][1000 genomes]
rs72856664	1.00[ASN][1000 genomes]
rs72856685	1.00[ASN][1000 genomes]
rs72856690	1.00[ASN][1000 genomes]
rs72856699	1.00[ASN][1000 genomes]
rs72858926	1.00[ASN][1000 genomes]
rs72858930	1.00[ASN][1000 genomes]
rs72858933	1.00[ASN][1000 genomes]
rs72858937	1.00[ASN][1000 genomes]
rs72858939	1.00[ASN][1000 genomes]
rs72858993	1.00[ASN][1000 genomes]
rs72863008	1.00[ASN][1000 genomes]
rs72863014	1.00[ASN][1000 genomes]
rs72863061	1.00[ASN][1000 genomes]
rs72863074	1.00[ASN][1000 genomes]
rs72863084	1.00[ASN][1000 genomes]
rs72863086	1.00[ASN][1000 genomes]
rs72863093	1.00[ASN][1000 genomes]
rs72865421	1.00[ASN][1000 genomes]
rs72865434	1.00[ASN][1000 genomes]
rs72865438	1.00[ASN][1000 genomes]
rs72865440	1.00[ASN][1000 genomes]
rs72865454	1.00[ASN][1000 genomes]
rs72865456	1.00[ASN][1000 genomes]
rs72865458	1.00[ASN][1000 genomes]
rs72865462	1.00[ASN][1000 genomes]
rs72865466	1.00[ASN][1000 genomes]
rs72865471	1.00[ASN][1000 genomes]
rs72865474	1.00[ASN][1000 genomes]
rs72865476	1.00[ASN][1000 genomes]
rs72865480	1.00[ASN][1000 genomes]
rs72865485	1.00[ASN][1000 genomes]
rs72865492	1.00[ASN][1000 genomes]
rs7663473	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7663880	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7666794	1.00[ASN][1000 genomes]
rs7680894	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7681278	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7684080	1.00[ASN][1000 genomes]
rs7698909	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74536000-74548400	Weak transcription	Stomach Mucosa	stomach
2	chr4:74540600-74545400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:74540600-74548400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:74540800-74545200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:74540800-74545200	Weak transcription	NHDF-Ad	bronchial
6	chr4:74540800-74547600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:74542800-74545400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:74542800-74546800	Weak transcription	Psoas Muscle	Psoas
9	chr4:74543000-74545000	Weak transcription	NH-A	brain
10	chr4:74543000-74545000	Weak transcription	Osteobl	bone
11	chr4:74543000-74545400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:74543000-74545400	Weak transcription	Fetal Stomach	stomach
13	chr4:74543000-74549800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:74543200-74545000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:74543200-74545200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:74543400-74545000	Weak transcription	NHEK	skin
17	chr4:74543400-74545200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:74543400-74545200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:74543400-74545200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:74543400-74545600	Weak transcription	A549	lung
21	chr4:74543400-74545800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:74543400-74548400	Weak transcription	Hela-S3	cervix
23	chr4:74543800-74545000	Weak transcription	HMEC	breast
24	chr4:74543800-74548000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr4:74544400-74546800	Enhancers	HUVEC	blood vessel

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