Variant report

Variant	rs6446952
Chromosome Location	chr4:74588238-74588239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:74542033..74544954-chr4:74586027..74588772,2	MCF-7	breast:
2	chr4:74577764..74579440-chr4:74586621..74589129,2	K562	blood:
3	chr4:74586389..74588857-chr4:74593832..74596900,3	MCF-7	breast:
4	chr4:74587494..74589438-chr4:74591195..74593381,3	K562	blood:
5	chr4:74584196..74587310-chr4:74587487..74589753,3	K562	blood:
6	chr4:74583020..74586578-chr4:74587301..74590136,4	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10019994	1.00[ASN][1000 genomes]
rs1247684	1.00[ASN][1000 genomes]
rs1406499	1.00[ASN][1000 genomes]
rs16849896	0.83[AMR][1000 genomes]
rs1745250	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2463883	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4285054	1.00[ASN][1000 genomes]
rs4694634	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59078835	1.00[ASN][1000 genomes]
rs59640098	1.00[ASN][1000 genomes]
rs6446943	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6818282	1.00[ASN][1000 genomes]
rs6848823	1.00[ASN][1000 genomes]
rs6855652	1.00[ASN][1000 genomes]
rs72858930	1.00[ASN][1000 genomes]
rs72858933	1.00[ASN][1000 genomes]
rs72858937	1.00[ASN][1000 genomes]
rs72858939	1.00[ASN][1000 genomes]
rs72858993	1.00[ASN][1000 genomes]
rs72863008	1.00[ASN][1000 genomes]
rs72863014	1.00[ASN][1000 genomes]
rs72863061	1.00[ASN][1000 genomes]
rs72863074	1.00[ASN][1000 genomes]
rs72863084	1.00[ASN][1000 genomes]
rs72863086	1.00[ASN][1000 genomes]
rs72863093	1.00[ASN][1000 genomes]
rs72865421	1.00[ASN][1000 genomes]
rs72865434	1.00[ASN][1000 genomes]
rs72865438	1.00[ASN][1000 genomes]
rs72865440	1.00[ASN][1000 genomes]
rs72865454	1.00[ASN][1000 genomes]
rs72865456	1.00[ASN][1000 genomes]
rs72865458	1.00[ASN][1000 genomes]
rs72865462	1.00[ASN][1000 genomes]
rs72865466	1.00[ASN][1000 genomes]
rs72865471	1.00[ASN][1000 genomes]
rs72865474	1.00[ASN][1000 genomes]
rs72865476	1.00[ASN][1000 genomes]
rs72865480	1.00[ASN][1000 genomes]
rs72865485	1.00[ASN][1000 genomes]
rs72865492	1.00[ASN][1000 genomes]
rs73827890	0.83[AMR][1000 genomes]
rs73827892	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7654490	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7654906	0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7663473	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7663880	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7666794	1.00[ASN][1000 genomes]
rs7680894	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7681278	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7684080	1.00[ASN][1000 genomes]
rs7698909	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1005231	chr4:74555497-74680079	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74581600-74589400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr4:74581800-74588600	Weak transcription	K562	blood
3	chr4:74583600-74589200	Enhancers	NHDF-Ad	bronchial
4	chr4:74584800-74591000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:74585000-74591600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:74586600-74589200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:74586800-74588600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:74586800-74588800	Enhancers	Osteobl	bone
9	chr4:74586800-74589000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:74586800-74589400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:74587200-74588600	Enhancers	HSMM	muscle
12	chr4:74587400-74588600	Enhancers	A549	lung
13	chr4:74587400-74589000	Enhancers	HMEC	breast
14	chr4:74587400-74589000	Enhancers	NH-A	brain
15	chr4:74587400-74589200	Enhancers	HUVEC	blood vessel
16	chr4:74587400-74589600	Enhancers	Hela-S3	cervix
17	chr4:74587400-74592600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:74587600-74588600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:74587600-74591200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:74587600-74592000	Weak transcription	Placenta	Placenta
21	chr4:74587800-74590000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:74587800-74591600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:74588000-74591200	Weak transcription	NHEK	skin
24	chr4:74588000-74595000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr4:74588000-74595200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr4:74588200-74591200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:74588200-74591600	Weak transcription	NHLF	lung

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