Variant report

Variant	rs72865492
Chromosome Location	chr4:74535611-74535612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10019994	1.00[ASN][1000 genomes]
rs1247684	1.00[ASN][1000 genomes]
rs1406499	1.00[ASN][1000 genomes]
rs1745250	1.00[ASN][1000 genomes]
rs1919480	1.00[ASN][1000 genomes]
rs2463883	1.00[ASN][1000 genomes]
rs41265663	1.00[ASN][1000 genomes]
rs41265665	1.00[ASN][1000 genomes]
rs4285054	1.00[ASN][1000 genomes]
rs4333154	1.00[ASN][1000 genomes]
rs4694634	1.00[ASN][1000 genomes]
rs59078835	1.00[ASN][1000 genomes]
rs59640098	1.00[ASN][1000 genomes]
rs59879767	1.00[ASN][1000 genomes]
rs6446943	1.00[ASN][1000 genomes]
rs6446952	1.00[ASN][1000 genomes]
rs66841185	1.00[ASN][1000 genomes]
rs6813414	1.00[ASN][1000 genomes]
rs6818282	1.00[ASN][1000 genomes]
rs6848823	1.00[ASN][1000 genomes]
rs6855652	1.00[ASN][1000 genomes]
rs72853185	1.00[ASN][1000 genomes]
rs72856610	1.00[ASN][1000 genomes]
rs72856614	1.00[ASN][1000 genomes]
rs72856618	1.00[ASN][1000 genomes]
rs72856622	1.00[ASN][1000 genomes]
rs72856634	1.00[ASN][1000 genomes]
rs72856638	1.00[ASN][1000 genomes]
rs72856640	1.00[ASN][1000 genomes]
rs72856641	1.00[ASN][1000 genomes]
rs72856648	1.00[ASN][1000 genomes]
rs72856650	1.00[ASN][1000 genomes]
rs72856656	1.00[ASN][1000 genomes]
rs72856662	1.00[ASN][1000 genomes]
rs72856664	1.00[ASN][1000 genomes]
rs72856685	1.00[ASN][1000 genomes]
rs72856690	1.00[ASN][1000 genomes]
rs72856699	1.00[ASN][1000 genomes]
rs72858926	1.00[ASN][1000 genomes]
rs72858930	1.00[ASN][1000 genomes]
rs72858933	1.00[ASN][1000 genomes]
rs72858937	1.00[ASN][1000 genomes]
rs72858939	1.00[ASN][1000 genomes]
rs72858993	1.00[ASN][1000 genomes]
rs72863008	1.00[ASN][1000 genomes]
rs72863014	1.00[ASN][1000 genomes]
rs72863061	1.00[ASN][1000 genomes]
rs72863074	1.00[ASN][1000 genomes]
rs72863084	1.00[ASN][1000 genomes]
rs72863086	1.00[ASN][1000 genomes]
rs72863093	1.00[ASN][1000 genomes]
rs72865421	1.00[ASN][1000 genomes]
rs72865434	1.00[ASN][1000 genomes]
rs72865438	1.00[ASN][1000 genomes]
rs72865440	1.00[ASN][1000 genomes]
rs72865454	1.00[ASN][1000 genomes]
rs72865456	1.00[ASN][1000 genomes]
rs72865458	1.00[ASN][1000 genomes]
rs72865462	1.00[ASN][1000 genomes]
rs72865466	1.00[ASN][1000 genomes]
rs72865471	1.00[ASN][1000 genomes]
rs72865474	1.00[ASN][1000 genomes]
rs72865476	1.00[ASN][1000 genomes]
rs72865480	1.00[ASN][1000 genomes]
rs72865485	1.00[ASN][1000 genomes]
rs7356188	1.00[ASN][1000 genomes]
rs7663473	1.00[ASN][1000 genomes]
rs7663880	1.00[ASN][1000 genomes]
rs7666794	1.00[ASN][1000 genomes]
rs7680894	1.00[ASN][1000 genomes]
rs7681278	1.00[ASN][1000 genomes]
rs7684080	1.00[ASN][1000 genomes]
rs7698909	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv3347072	chr4:74531710-74537136	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74529000-74539200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:74530600-74540200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:74534200-74536600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:74534400-74535800	Enhancers	Fetal Brain Female	brain
5	chr4:74534400-74536200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:74534400-74536200	Enhancers	Fetal Muscle Leg	muscle
7	chr4:74534400-74536600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:74534600-74535800	Active TSS	Ovary	ovary
9	chr4:74534600-74536000	Enhancers	Fetal Brain Male	brain
10	chr4:74534600-74536000	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:74534800-74536000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:74534800-74536200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:74534800-74540200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:74535000-74536000	Enhancers	Fetal Stomach	stomach
15	chr4:74535000-74536000	Enhancers	NH-A	brain
16	chr4:74535000-74536200	Enhancers	HSMM	muscle
17	chr4:74535000-74536600	Enhancers	Fetal Lung	lung
18	chr4:74535200-74536200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:74535200-74536200	Enhancers	Gastric	stomach
20	chr4:74535200-74536600	Enhancers	Pancreas	Pancrea
21	chr4:74535200-74540400	Weak transcription	Osteobl	bone
22	chr4:74535400-74535800	Weak transcription	Adipose Nuclei	Adipose
23	chr4:74535400-74535800	Active TSS	Duodenum Mucosa	Duodenum
24	chr4:74535400-74535800	Weak transcription	Stomach Mucosa	stomach
25	chr4:74535400-74536000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:74535400-74536000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:74535400-74536000	Enhancers	Fetal Intestine Large	intestine
28	chr4:74535400-74536000	Enhancers	NHEK	skin
29	chr4:74535400-74536200	Enhancers	Fetal Intestine Small	intestine
30	chr4:74535400-74538800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:74535400-74541400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr4:74535600-74535800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:74535600-74535800	Enhancers	Fetal Heart	heart
34	chr4:74535600-74536000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:74535600-74536000	Enhancers	Brain Anterior Caudate	brain
36	chr4:74535600-74536000	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr4:74535600-74540200	Weak transcription	NHDF-Ad	bronchial

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