Variant report

Variant	rs7684080
Chromosome Location	chr4:74521270-74521271
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10019994	1.00[ASN][1000 genomes]
rs1247684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132873	1.00[ASN][1000 genomes]
rs1406499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1745250	1.00[ASN][1000 genomes]
rs1919480	1.00[ASN][1000 genomes]
rs2463883	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41265663	1.00[ASN][1000 genomes]
rs41265665	1.00[ASN][1000 genomes]
rs4285054	1.00[ASN][1000 genomes]
rs4333154	1.00[ASN][1000 genomes]
rs4694634	1.00[ASN][1000 genomes]
rs59078835	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59640098	1.00[ASN][1000 genomes]
rs59879767	1.00[ASN][1000 genomes]
rs6446943	1.00[ASN][1000 genomes]
rs6446952	1.00[ASN][1000 genomes]
rs66841185	1.00[ASN][1000 genomes]
rs6813414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818282	1.00[ASN][1000 genomes]
rs6848823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853402	1.00[ASN][1000 genomes]
rs6855652	1.00[ASN][1000 genomes]
rs72853185	1.00[ASN][1000 genomes]
rs72856610	1.00[ASN][1000 genomes]
rs72856614	1.00[ASN][1000 genomes]
rs72856618	1.00[ASN][1000 genomes]
rs72856622	1.00[ASN][1000 genomes]
rs72856634	1.00[ASN][1000 genomes]
rs72856638	1.00[ASN][1000 genomes]
rs72856640	1.00[ASN][1000 genomes]
rs72856641	1.00[ASN][1000 genomes]
rs72856648	1.00[ASN][1000 genomes]
rs72856650	1.00[ASN][1000 genomes]
rs72856656	1.00[ASN][1000 genomes]
rs72856662	1.00[ASN][1000 genomes]
rs72856664	1.00[ASN][1000 genomes]
rs72856685	1.00[ASN][1000 genomes]
rs72856690	1.00[ASN][1000 genomes]
rs72856699	1.00[ASN][1000 genomes]
rs72858926	1.00[ASN][1000 genomes]
rs72858930	1.00[ASN][1000 genomes]
rs72858933	1.00[ASN][1000 genomes]
rs72858937	1.00[ASN][1000 genomes]
rs72858939	1.00[ASN][1000 genomes]
rs72858993	1.00[ASN][1000 genomes]
rs72863008	1.00[ASN][1000 genomes]
rs72863014	1.00[ASN][1000 genomes]
rs72863061	1.00[ASN][1000 genomes]
rs72863074	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863086	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865434	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865462	1.00[ASN][1000 genomes]
rs72865466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865480	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865492	1.00[ASN][1000 genomes]
rs7356188	1.00[ASN][1000 genomes]
rs7663473	1.00[ASN][1000 genomes]
rs7663880	1.00[ASN][1000 genomes]
rs7666794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680894	1.00[ASN][1000 genomes]
rs7681278	1.00[ASN][1000 genomes]
rs7698909	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74516400-74525000	Weak transcription	Stomach Mucosa	stomach
2	chr4:74516800-74521600	Enhancers	Dnd41	blood
3	chr4:74517400-74526400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:74518800-74521400	Enhancers	Fetal Thymus	thymus
5	chr4:74519000-74526400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:74519200-74527200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:74520000-74526200	Weak transcription	HUVEC	blood vessel
8	chr4:74521200-74530000	Weak transcription	Thymus	Thymus

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