Variant report

Variant	rs10020313
Chromosome Location	chr4:152536990-152536991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10002512	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10002750	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10010061	1.00[AMR][1000 genomes]
rs10014639	1.00[AMR][1000 genomes]
rs10015816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032584	1.00[AMR][1000 genomes]
rs10034746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10212987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471071	1.00[AMR][1000 genomes]
rs10471072	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13353741	1.00[AMR][1000 genomes]
rs13435896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027673	0.93[AFR][1000 genomes]
rs17027675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027710	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027738	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027739	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027742	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027757	1.00[AMR][1000 genomes]
rs17027762	1.00[AMR][1000 genomes]
rs17027764	1.00[AMR][1000 genomes]
rs17027767	1.00[AMR][1000 genomes]
rs28404927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28417352	1.00[AMR][1000 genomes]
rs28454065	1.00[AMR][1000 genomes]
rs28461656	1.00[AMR][1000 genomes]
rs28494961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28539581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28540596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28558989	1.00[AMR][1000 genomes]
rs28591074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28595853	1.00[AMR][1000 genomes]
rs28618192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634312	1.00[AMR][1000 genomes]
rs28656459	1.00[AMR][1000 genomes]
rs28722860	1.00[AMR][1000 genomes]
rs28788179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28798801	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28822494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28836879	1.00[AFR][1000 genomes]
rs28837860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28884810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57562339	1.00[AMR][1000 genomes]
rs61653326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954898	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956911	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956926	1.00[AMR][1000 genomes]
rs72956927	1.00[AMR][1000 genomes]
rs9307882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307883	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307884	1.00[AMR][1000 genomes]
rs9307885	1.00[AMR][1000 genomes]
rs9683731	1.00[AMR][1000 genomes]
rs9994720	1.00[AMR][1000 genomes]
rs9997778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880624	chr4:152280646-152549112	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv881342	chr4:152363772-152560449	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830114	chr4:152401288-152548606	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152499200-152567600	Weak transcription	Pancreas	Pancrea
2	chr4:152521600-152546200	Weak transcription	Right Ventricle	heart
3	chr4:152522400-152548400	Weak transcription	NHEK	skin
4	chr4:152522400-152560200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:152522600-152548400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:152525600-152544200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:152527000-152543200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:152528400-152541200	Weak transcription	Left Ventricle	heart
9	chr4:152528400-152548600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:152536000-152537600	Enhancers	Fetal Heart	heart
11	chr4:152536200-152538600	Weak transcription	Psoas Muscle	Psoas
12	chr4:152536200-152538600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:152536400-152539200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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