Variant report

Variant	rs72956926
Chromosome Location	chr4:152581015-152581016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10002512	1.00[AMR][1000 genomes]
rs10002750	1.00[AMR][1000 genomes]
rs10010061	1.00[AMR][1000 genomes]
rs10014639	1.00[AMR][1000 genomes]
rs10015816	1.00[AMR][1000 genomes]
rs10017489	1.00[AMR][1000 genomes]
rs10020313	1.00[AMR][1000 genomes]
rs10027105	1.00[AMR][1000 genomes]
rs10032584	1.00[AMR][1000 genomes]
rs10034746	1.00[AMR][1000 genomes]
rs10212987	1.00[AMR][1000 genomes]
rs10213361	1.00[AMR][1000 genomes]
rs10471071	1.00[AMR][1000 genomes]
rs10471072	1.00[AMR][1000 genomes]
rs13353741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435896	1.00[AMR][1000 genomes]
rs17027675	1.00[AMR][1000 genomes]
rs17027703	1.00[AMR][1000 genomes]
rs17027710	1.00[AMR][1000 genomes]
rs17027725	1.00[AMR][1000 genomes]
rs17027738	1.00[AMR][1000 genomes]
rs17027739	1.00[AMR][1000 genomes]
rs17027742	1.00[AMR][1000 genomes]
rs17027757	1.00[AMR][1000 genomes]
rs17027762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28404927	1.00[AMR][1000 genomes]
rs28417352	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28454065	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28461656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28494961	1.00[AMR][1000 genomes]
rs28539581	1.00[AMR][1000 genomes]
rs28540596	1.00[AMR][1000 genomes]
rs28558989	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591074	1.00[AMR][1000 genomes]
rs28595853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28618192	1.00[AMR][1000 genomes]
rs28634312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656459	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28722860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28788179	1.00[AMR][1000 genomes]
rs28798801	1.00[AMR][1000 genomes]
rs28822494	1.00[AMR][1000 genomes]
rs28837860	1.00[AMR][1000 genomes]
rs28884810	1.00[AMR][1000 genomes]
rs57562339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61653326	1.00[AMR][1000 genomes]
rs72954810	1.00[AMR][1000 genomes]
rs72954898	1.00[AMR][1000 genomes]
rs72956911	1.00[AMR][1000 genomes]
rs72956927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307882	1.00[AMR][1000 genomes]
rs9307883	1.00[AMR][1000 genomes]
rs9307884	1.00[AMR][1000 genomes]
rs9307885	1.00[AMR][1000 genomes]
rs9683731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994720	1.00[AMR][1000 genomes]
rs9997778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
2	chr4:152564200-152595200	Weak transcription	Aorta	Aorta
3	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:152570600-152582200	Weak transcription	Spleen	Spleen
6	chr4:152571200-152584200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:152571200-152584200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:152571600-152583600	Weak transcription	Ovary	ovary
9	chr4:152571600-152595000	Weak transcription	HepG2	liver
10	chr4:152574400-152582800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:152575400-152582000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:152577200-152581400	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr4:152577200-152585000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:152577400-152581600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:152578000-152581400	Strong transcription	Left Ventricle	heart
16	chr4:152578400-152595200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:152578800-152581200	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr4:152579000-152583400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:152579200-152584000	Weak transcription	Colonic Mucosa	Colon
20	chr4:152579200-152597400	Weak transcription	Liver	Liver
21	chr4:152579400-152582400	Enhancers	Psoas Muscle	Psoas
22	chr4:152579600-152581200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr4:152579600-152581400	Enhancers	Fetal Thymus	thymus
24	chr4:152579600-152581800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:152579600-152583200	Weak transcription	Esophagus	oesophagus
26	chr4:152579600-152584400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:152579600-152585000	Weak transcription	Gastric	stomach
28	chr4:152579600-152587600	Weak transcription	NHEK	skin
29	chr4:152579600-152592200	Weak transcription	Right Ventricle	heart
30	chr4:152579800-152581200	Weak transcription	Fetal Intestine Small	intestine
31	chr4:152579800-152581200	Enhancers	HUVEC	blood vessel
32	chr4:152579800-152582200	Weak transcription	Lung	lung
33	chr4:152579800-152583400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr4:152579800-152584000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr4:152579800-152585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:152579800-152592800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:152580000-152581200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:152580000-152581200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:152580000-152581200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr4:152580000-152581200	Enhancers	Dnd41	blood
41	chr4:152580000-152581400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:152580000-152581400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr4:152580000-152581400	Enhancers	Fetal Muscle Leg	muscle
44	chr4:152580000-152581400	Enhancers	Rectal Smooth Muscle	rectum
45	chr4:152580000-152581600	Enhancers	Adipose Nuclei	Adipose
46	chr4:152580000-152595200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:152580200-152581200	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr4:152580200-152581200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr4:152580200-152581200	Enhancers	Fetal Stomach	stomach
50	chr4:152580200-152581400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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