The 2.0 version of rSNPBase

Variant report

Variant rs57562339
Chromosome Location chr4:152595797-152595798
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:152563800-152625200 Weak transcription Hela-S3 cervix
2 chr4:152567400-152608600 Weak transcription iPS-20b Cell Line embryonic stem cell
3 chr4:152567800-152609000 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr4:152579200-152597400 Weak transcription Liver Liver
5 chr4:152580200-152596000 Weak transcription Placenta Amnion Placenta Amnion
6 chr4:152580800-152595800 Weak transcription HUES6 Cell Line embryonic stem cell
7 chr4:152580800-152596800 Weak transcription Primary T cells from cord blood blood
8 chr4:152581200-152602800 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr4:152581200-152608400 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr4:152582400-152595800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr4:152583200-152596000 Weak transcription Spleen Spleen
12 chr4:152584800-152595800 Weak transcription Fetal Intestine Large intestine
13 chr4:152585200-152596000 Weak transcription Colonic Mucosa Colon
14 chr4:152585600-152628600 Weak transcription H9 Cell Line embryonic stem cell
15 chr4:152585800-152596200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr4:152585800-152600400 Weak transcription Gastric stomach
17 chr4:152585800-152640400 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr4:152586000-152596600 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr4:152586400-152609000 Weak transcription Primary hematopoietic stem cells blood
20 chr4:152588400-152596000 Weak transcription Brain Germinal Matrix brain
21 chr4:152588800-152595800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr4:152589200-152608800 Weak transcription Primary T cells fromperipheralblood blood
23 chr4:152589200-152619200 Weak transcription Dnd41 blood
24 chr4:152590000-152595800 Weak transcription Brain Anterior Caudate brain
25 chr4:152590000-152595800 Weak transcription Brain Inferior Temporal Lobe brain
26 chr4:152590200-152596000 Weak transcription HSMMtube muscle
27 chr4:152590400-152601600 Weak transcription Primary B cells from cord blood blood
28 chr4:152590600-152595800 Weak transcription Brain Cingulate Gyrus brain
29 chr4:152590600-152595800 Weak transcription Fetal Kidney kidney
30 chr4:152590600-152597600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr4:152590600-152609000 Weak transcription Primary monocytes fromperipheralblood blood
32 chr4:152590800-152596000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr4:152591200-152596000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr4:152591200-152597400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr4:152591200-152608600 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr4:152591200-152646800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr4:152591400-152595800 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr4:152591800-152596000 Enhancers Fetal Heart heart
39 chr4:152592000-152595800 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr4:152592000-152598200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr4:152592200-152596000 Enhancers Right Ventricle heart
42 chr4:152592200-152608000 Weak transcription Thymus Thymus
43 chr4:152592400-152597800 Enhancers Left Ventricle heart
44 chr4:152592600-152595800 Enhancers Right Atrium heart
45 chr4:152592600-152636400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr4:152593000-152595800 Weak transcription Adipose Nuclei Adipose
47 chr4:152593200-152595800 Weak transcription Skeletal Muscle Male skeletal muscle
48 chr4:152593200-152596000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
49 chr4:152593200-152596200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
50 chr4:152593400-152596000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015