Variant report

Variant	rs10020535
Chromosome Location	chr4:106789717-106789718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10018449	1.00[AMR][1000 genomes]
rs28464982	1.00[AMR][1000 genomes]
rs28547256	1.00[AMR][1000 genomes]
rs58120447	1.00[AMR][1000 genomes]
rs58185526	1.00[AMR][1000 genomes]
rs58658784	1.00[AMR][1000 genomes]
rs6857305	1.00[AMR][1000 genomes]
rs72956788	1.00[AMR][1000 genomes]
rs72968694	1.00[AMR][1000 genomes]
rs72968696	1.00[AMR][1000 genomes]
rs72968697	1.00[AMR][1000 genomes]
rs72968699	1.00[AMR][1000 genomes]
rs72970405	1.00[AMR][1000 genomes]
rs72970410	1.00[AMR][1000 genomes]
rs72970412	1.00[AMR][1000 genomes]
rs72970419	1.00[AMR][1000 genomes]
rs73836905	1.00[AMR][1000 genomes]
rs9994835	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830028	chr4:106769299-106801806	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1797065	chr4:106769322-106799532	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106788600-106792800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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