Variant report

Variant	rs58120447
Chromosome Location	chr4:106847503-106847504
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10018449	1.00[AMR][1000 genomes]
rs10020535	1.00[AMR][1000 genomes]
rs28464982	1.00[AMR][1000 genomes]
rs28547256	1.00[AMR][1000 genomes]
rs58185526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58658784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832565	0.98[AFR][1000 genomes]
rs6857305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956788	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968685	0.98[AFR][1000 genomes]
rs72968694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970410	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994835	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
4	chr4:106843200-106853800	Weak transcription	GM12878-XiMat	blood
5	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
6	chr4:106843800-106858200	Weak transcription	Lung	lung
7	chr4:106844800-106859400	Weak transcription	Aorta	Aorta
8	chr4:106845000-106857800	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:106845200-106850600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:106845400-106848400	Weak transcription	Fetal Intestine Large	intestine
11	chr4:106845400-106848400	Weak transcription	HSMMtube	muscle
12	chr4:106845400-106852600	Weak transcription	Fetal Intestine Small	intestine
13	chr4:106845400-106853800	Weak transcription	Psoas Muscle	Psoas
14	chr4:106845400-106855800	Weak transcription	HSMM	muscle
15	chr4:106845800-106857600	Weak transcription	Fetal Heart	heart
16	chr4:106847200-106851200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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