Variant report

Variant	rs72970405
Chromosome Location	chr4:106864887-106864888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10018449	1.00[AMR][1000 genomes]
rs10020535	1.00[AMR][1000 genomes]
rs28464982	1.00[AMR][1000 genomes]
rs28547256	1.00[AMR][1000 genomes]
rs58120447	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58185526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58658784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832565	0.95[AFR][1000 genomes]
rs6857305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968685	0.95[AFR][1000 genomes]
rs72968694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968696	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970412	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836905	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994835	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
4	chr4:106851200-106871800	Weak transcription	Esophagus	oesophagus
5	chr4:106853000-106879000	Weak transcription	Fetal Stomach	stomach
6	chr4:106854000-106865600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:106854000-106866600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:106854400-106886800	Weak transcription	GM12878-XiMat	blood
9	chr4:106854600-106866400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:106856000-106865400	Weak transcription	HSMM	muscle
11	chr4:106858400-106871800	Weak transcription	Lung	lung
12	chr4:106859400-106868800	Strong transcription	Fetal Intestine Large	intestine
13	chr4:106859600-106865800	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:106861800-106865200	Weak transcription	HSMMtube	muscle
15	chr4:106861800-106867600	Weak transcription	Aorta	Aorta
16	chr4:106862400-106867400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:106864400-106865200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr4:106864400-106865200	Enhancers	Fetal Muscle Leg	muscle
19	chr4:106864400-106865800	Weak transcription	Fetal Lung	lung
20	chr4:106864400-106877200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:106864600-106867000	Enhancers	Fetal Heart	heart
22	chr4:106864600-106878200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:106864800-106886600	Weak transcription	Fetal Kidney	kidney

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