Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:106854262-106854651	HL-60	blood:	n/a	chr4:106854518-106854531 chr4:106854519-106854532 chr4:106854520-106854529
2	GATA3	chr4:106854118-106854489	T-47D	breast:	n/a	n/a
3	CEBPB	chr4:106854079-106854539	MCF-7	breast:	n/a	chr4:106854094-106854107
4	EP300	chr4:106854169-106854586	MCF-7	breast:	n/a	chr4:106854516-106854530
5	GATA3	chr4:106853936-106854401	MCF-7	breast:	n/a	n/a
6	NR2F2	chr4:106854126-106854579	MCF-7	breast:	n/a	n/a
7	RUNX3	chr4:106854239-106854604	GM12878	blood:	n/a	n/a
8	GATA3	chr4:106853992-106854550	MCF-7	breast:	n/a	n/a
9	SPI1	chr4:106854254-106854796	GM12878	blood:	n/a	chr4:106854518-106854531 chr4:106854519-106854532 chr4:106854520-106854529
10	GATA3	chr4:106854101-106854505	MCF-7	breast:	n/a	n/a
11	RUNX3	chr4:106854213-106854705	GM12878	blood:	n/a	n/a
12	SIN3AK20	chr4:106853869-106854553	MCF-7	breast:	n/a	n/a
13	GATA3	chr4:106854201-106854492	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106849386..106852072-chr4:106853936..106855606,2	K562	blood:

Variant related genes	Relation type
ENSG00000250740	TF binding region
ENSG00000250740	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
4	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
5	chr4:106843800-106858200	Weak transcription	Lung	lung
6	chr4:106844800-106859400	Weak transcription	Aorta	Aorta
7	chr4:106845000-106857800	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:106845400-106855800	Weak transcription	HSMM	muscle
9	chr4:106845800-106857600	Weak transcription	Fetal Heart	heart
10	chr4:106849200-106857800	Weak transcription	HSMMtube	muscle
11	chr4:106850000-106860600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:106850400-106859400	Weak transcription	Fetal Intestine Large	intestine
13	chr4:106851200-106871800	Weak transcription	Esophagus	oesophagus
14	chr4:106851600-106863800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:106852200-106863600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr4:106852600-106859600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:106853000-106879000	Weak transcription	Fetal Stomach	stomach
18	chr4:106853800-106854400	Enhancers	GM12878-XiMat	blood
19	chr4:106854000-106865600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:106854000-106866600	Weak transcription	Fetal Intestine Small	intestine
21	chr4:106854200-106854600	Enhancers	HepG2	liver

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