Variant report

Variant	rs10020931
Chromosome Location	chr4:158726436-158726437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10004462	0.93[ASN][1000 genomes]
rs10027160	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10517676	0.97[ASN][1000 genomes]
rs11935204	0.92[ASN][1000 genomes]
rs12711313	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13146529	0.83[EUR][1000 genomes]
rs13146927	0.83[EUR][1000 genomes]
rs13149222	0.98[ASN][1000 genomes]
rs1448439	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2345275	0.97[ASN][1000 genomes]
rs4142913	0.95[ASN][1000 genomes]
rs61625157	0.95[ASN][1000 genomes]
rs7662735	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7671381	0.98[ASN][1000 genomes]
rs7690058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1025064	chr4:158719316-158898333	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158724600-158727000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:158724600-158727000	Enhancers	Fetal Intestine Large	intestine
3	chr4:158724600-158727600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:158724800-158734400	Weak transcription	Aorta	Aorta
5	chr4:158725400-158727200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr4:158725400-158727200	Enhancers	Stomach Smooth Muscle	stomach
7	chr4:158725600-158731000	Weak transcription	Fetal Intestine Small	intestine
8	chr4:158725800-158727200	Enhancers	HepG2	liver
9	chr4:158725800-158731200	Weak transcription	Liver	Liver
10	chr4:158726200-158726600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr4:158726200-158728000	Enhancers	Rectal Smooth Muscle	rectum
12	chr4:158726400-158726600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:158726400-158726800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:158726400-158726800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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