Variant report

Variant	rs12711313
Chromosome Location	chr4:158716242-158716243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10004462	0.83[ASN][1000 genomes]
rs10020931	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10027160	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10517676	0.86[ASN][1000 genomes]
rs11935204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13146529	0.86[CHB][hapmap]
rs13149222	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2345275	0.89[ASN][1000 genomes]
rs4142913	0.84[ASN][1000 genomes]
rs61625157	0.87[ASN][1000 genomes]
rs6839071	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs7662735	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7671381	0.87[ASN][1000 genomes]
rs7690058	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158709000-158717600	Weak transcription	Aorta	Aorta
2	chr4:158710400-158717600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:158712600-158717400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:158713000-158717400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:158714400-158717200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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