Variant report

Variant	rs7671381
Chromosome Location	chr4:158727948-158727949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10004462	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10020931	0.98[ASN][1000 genomes]
rs10023422	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10027160	0.97[ASN][1000 genomes]
rs10027478	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10517676	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11935204	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12711313	0.87[ASN][1000 genomes]
rs13146529	1.00[CHB][hapmap]
rs13149222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1383694	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2345275	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2345277	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34174601	0.84[EUR][1000 genomes]
rs4142913	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61625157	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6822457	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6839071	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7662735	0.89[ASN][1000 genomes]
rs7690058	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018387	chr4:157959931-158764190	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1025064	chr4:158719316-158898333	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1808904	chr4:158727016-158731374	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2760875	chr4:158727028-158744592	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv517103	chr4:158727739-158731019	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv437449	chr4:158727739-158732576	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158724800-158734400	Weak transcription	Aorta	Aorta
2	chr4:158725600-158731000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:158725800-158731200	Weak transcription	Liver	Liver
4	chr4:158726200-158728000	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:158727000-158731000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:158727000-158731400	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:158727200-158730200	Weak transcription	HepG2	liver
8	chr4:158727800-158728400	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links